Mp1g23280



Description

Annotation

Database ID Description
Gene3D G3DSA:1.10.238.10 -
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF12763 Cytoskeletal-regulatory complex EF hand
ProSiteProfiles PS50222 EF-hand calcium-binding domain profile.
PANTHER PTHR11216 EH DOMAIN
Coils Coil Coil
SMART SM00027 eh_3
SMART SM00054 efh_1
CDD cd00052 EH
Pfam PF13202 EF hand
ProSiteProfiles PS50031 EH domain profile.
SUPERFAMILY SSF47473 EF-hand
KEGG K12472 epidermal growth factor receptor substrate 15
KOG KOG0998 Synaptic vesicle protein EHS-1 and related EH domain proteins; [TU]
KOG KOG2092 Uncharacterized conserved protein; C-term missing; [S]
MapolyID Mapoly0065s0050 -
GO GO:0005509 calcium ion binding
GO GO:0005515 protein binding
GO GO:0006897 endocytosis
GO GO:0005886 plasma membrane
GO GO:0016197 endosomal transport
GO GO:0005737 cytoplasm

Nomenclature

Gene symbol Product Transcript ID Status
MpSRI2-like Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp1g23280.1 chr1:24777934..24786238 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp1g23280 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp1g23280 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.