Mp2g10620



Description

Annotation

Database ID Description
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.30.30.1190 -
SUPERFAMILY SSF90229 CCCH zinc finger
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
SMART SM00356 c3hfinal6
Gene3D G3DSA:4.10.1000.10 -
PANTHER PTHR12506 PROTEIN PHOSPHATASE RELATED
FunFam G3DSA:4.10.1000.10:FF:000030 CCCH type zinc finger protein
FunFam G3DSA:4.10.1000.10:FF:000028 Zinc finger nuclease 2
KOG KOG1677 CCCH-type Zn-finger protein; [R]
KOG KOG1677 CCCH-type Zn-finger protein; N-term missing; [R]
MapolyID Mapoly0023s0030 -
GO GO:0003729 mRNA binding
GO GO:0046872 metal ion binding

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H9 transcription factor, C3H Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g10620.1 chr2:11630926..11639507 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g10620.2 chr2:11630926..11639507 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g10620 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g10620 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.