Mp2g23430



Description

Annotation

Database ID Description
PANTHER PTHR23123 PHD/F-BOX CONTAINING PROTEIN
Pfam PF13621 Cupin-like domain
Pfam PF17811 Jumonji helical domain
ProSiteProfiles PS51184 JmjC domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00558 cupin_9
Gene3D G3DSA:2.60.120.650 Cupin
SUPERFAMILY SSF51197 Clavaminate synthase-like
KOG KOG1633 F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains; C-term missing; [B]
MapolyID Mapoly0191s0009 -
GO GO:0003712 transcription coregulator activity
GO GO:0006482 protein demethylation
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0032452 histone demethylase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpCupin43 Cupin Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp2g23430.1 chr2:28231344..28240249 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g23430.2 chr2:28231344..28240249 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g23430.3 chr2:28231344..28240247 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g23430.4 chr2:28231344..28240247 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g23430 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g23430 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.