Mp2g24710



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd15873 R-SNARE_STXBP5_6
Coils Coil Coil
SUPERFAMILY SSF58038 SNARE fusion complex
ProSiteProfiles PS50892 v-SNARE coiled-coil homology domain profile.
Pfam PF00957 Synaptobrevin
Gene3D G3DSA:1.20.5.110 -
PANTHER PTHR10241 LETHAL 2 GIANT LARVAE PROTEIN
KOG KOG1983 Tomosyn and related SNARE-interacting proteins; N-term missing; [U]
MapolyID Mapoly0207s0009 -
GO GO:0005096 GTPase activator activity
GO GO:0019905 syntaxin binding
GO GO:0005886 plasma membrane
GO GO:0017157 regulation of exocytosis
GO GO:0005737 cytoplasm
GO GO:0045159 myosin II binding

Nomenclature

Gene symbol Product Transcript ID Status
MpTOMOSYN12 Ortholog of Arabidopsis TOMOSYN1 genes Published

Transcript models

Transcript ID Location Sequences Extract region
Mp2g24710.1 chr2:30146766..30150485 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g24710.2 chr2:30147021..30150485 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp2g24710 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp2g24710 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.