Mp3g06860



Description

Annotation

Database ID Description
Gene3D G3DSA:2.40.50.40 -
Gene3D G3DSA:1.10.10.60 -
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF46689 Homeodomain-like
CDD cd00086 homeodomain
SMART SM00389 HOX_1
ProSiteProfiles PS50071 'Homeobox' domain profile.
Pfam PF16719 SAWADEE domain
Gene3D G3DSA:2.30.30.140 -
PANTHER PTHR33827 PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2
KOG KOG2150 CCR4-NOT transcriptional regulation complex, NOT5 subunit; N-term missing; C-term missing; [K]
MapolyID Mapoly0006s0154 -
GO GO:0003682 chromatin binding
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpHD2 transcription factor, HD, homeodomain protein Published
MpSAWADEE transcription factor, HD, homeodomain protein Published

Transcript models

Transcript ID Location Sequences Extract region
Mp3g06860.1 chr3:7063925..7073524 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g06860 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g06860 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.