Mp3g07450



Description

Annotation

Database ID Description
Pfam PF02171 Piwi domain
PANTHER PTHR22891 EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
SUPERFAMILY SSF53098 Ribonuclease H-like
Gene3D G3DSA:3.40.50.2300 -
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.420.10 -
ProSiteProfiles PS50822 Piwi domain profile.
SMART SM00950 Piwi_a_2
KOG KOG1041 Translation initiation factor 2C (eIF-2C) and related proteins; N-term missing; [J]
MapolyID Mapoly0006s0220 -
GO GO:0004521 RNA endonuclease activity
GO GO:0003723 RNA binding
GO GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpPIWIa PIWI, siRNA biogenesis Provisional

Associated Literature (AI-based literature mining, Beta-version)

PIWI-domain containing protein implicated in siRNA processing. Its expression was profiled and found increased in the antheridiophore.

1 core 1 peripheral

Schmid, M. W., et al. (2018) · Genome Biology  research experimental subject
PIWI-domain containing protein implicated in siRNA processing. Its expression was profiled and found increased in the antheridiophore.
Aguilar-Cruz, A., et al. (2019) · New Phytologist  research experimental background
MpPIWIa PIWI-clade Argonaute; methylation review

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp3g07450.1 chr3:7667728..7672355 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.