Mp3g15890



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Coils Coil Coil
PANTHER PTHR22881 BROMODOMAIN CONTAINING PROTEIN
Gene3D G3DSA:1.20.920.10 -
SUPERFAMILY SSF47370 Bromodomain
PRINTS PR00503 Bromodomain signature
ProSiteProfiles PS50014 Bromodomain profile.
Pfam PF00439 Bromodomain
SMART SM00297 bromo_6
CDD cd04369 Bromodomain
ProSitePatterns PS00633 Bromodomain signature.
KEGG K22184 bromodomain-containing protein 9
KOG KOG0955 PHD finger protein BR140/LIN-49; N-term missing; [R]
KOG KOG1984 Vesicle coat complex COPII, subunit SFB3; C-term missing; [U]
MapolyID Mapoly0004s0082 -
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpBromo9 Chromatin related protein Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp3g15890.1 chr3:16390373..16400066 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g15890 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g15890 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.