Mp3g23440



Description

Annotation

Database ID Description
Gene3D G3DSA:3.30.160.60 Classic Zinc Finger
MobiDBLite mobidb-lite consensus disorder prediction
ProSitePatterns PS00028 Zinc finger C2H2 type domain signature.
ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile.
PANTHER PTHR46353 ZINC FINGER PROTEIN 5
Pfam PF13912 C2H2-type zinc finger
SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers
KOG KOG1984 Vesicle coat complex COPII, subunit SFB3; C-term missing; [U]
MapolyID Mapoly0024s0120 -
GO GO:0005634 nucleus
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0010090 trichome morphogenesis
GO GO:0009736 cytokinin-activated signaling pathway
GO GO:0010026 trichome differentiation
GO GO:0000976 transcription cis-regulatory region binding
GO GO:0009740 gibberellic acid mediated signaling pathway

Nomenclature

Gene symbol Product Transcript ID Status
MpJAGGED transcription factor, C2H2-ZnF Provisional

Transcript models

Transcript ID Location Sequences Extract region
Mp3g23440.1 chr3:26639388..26643717 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g23440 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g23440 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.