Mp4g04910



Description

Annotation

Database ID Description
SMART SM00353 finulus
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain
FunFam G3DSA:4.10.280.10:FF:000066 BHLH transcription factor
CDD cd11443 bHLH_AtAMS_like
PANTHER PTHR31945 TRANSCRIPTION FACTOR SCREAM2-RELATED
Gene3D G3DSA:4.10.280.10 -
ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile.
CDD cd04873 ACT_UUR-ACR-like
Pfam PF00010 Helix-loop-helix DNA-binding domain
KOG KOG1318 Helix loop helix transcription factor EB; N-term missing; C-term missing; [K]
MapolyID Mapoly0150s0015 -
GO GO:0043565 sequence-specific DNA binding
GO GO:0005634 nucleus
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0046983 protein dimerization activity
GO GO:0006355 regulation of DNA-templated transcription

Nomenclature

Gene symbol Product Transcript ID Status
MpBHLH16 transcription factor, bHLH Published
MpICE1 basic helix loop helix transcription factor Published

Associated Literature (AI-based literature mining, Beta-version)

basic helix loop helix transcription factor; Mutant alleles produced by genome editing and sporeling transformation of F1 from Tak1 X Tak2 cross (from nomenclature)

0 core 2 peripheral

Lu, Y.-T., et al. (2024) · Current Biology  research experimental comparator
ICE bHLH (MpbHLH16, Mp4g04910); heterodimer partner context.
Moriya, K. C., et al. (2023) · Nature Plants  research experimental comparator
Class-IIIb bHLH (Mp4g04910); ICE/SCRM-like (comparison).

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g04910.1 chr4:6615880..6620805 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.