Mp4g09890
Description
Annotation
| Database | ID | Description |
|---|---|---|
| PANTHER | PTHR31262 | RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC |
| Pfam | PF00101 | Ribulose bisphosphate carboxylase, small chain |
| Hamap | MF_00859 | Ribulose bisphosphate carboxylase small subunit [cbbS]. |
| Gene3D | G3DSA:3.30.190.10 | Ribulose bisphosphate carboxylase, small subunit |
| FunFam | G3DSA:3.30.190.10:FF:000001 | Ribulose bisphosphate carboxylase small chain, chloroplastic |
| CDD | cd03527 | RuBisCO_small |
| SUPERFAMILY | SSF55239 | RuBisCO, small subunit |
| SMART | SM00961 | RuBisCO_small_2_a |
| PRINTS | PR00152 | RuBisCO small subunit signature |
| KEGG | K01602 | ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] |
| MapolyID | Mapoly0132s0032 | - |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpRBCS | Ortholog of Arabidopsis RBCS genes | Published |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp4g09890 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g09890.1 CAGTTTGAGG TATTTAGCTT TTCCCCAAGG CCTCCGAAAG CCTGTCGCAG ATTCCCACAA ACTTTCATCG AGAGCTGCAG CTTTCGACGA CGAGCGAGCG ATCAGCATCC CGCCATGGCT TCAATTGTCG CTTCCTCCGC CGTCGTCACC CCGGTCGCAG CTCTCGCTGC TTCCCGCACC ACTTCGACCT CCGGGGCCGT GTCCGTCAGC GCCTTCGCTG GCCTCAAGCC CGTCTCTGGC CAGAGCGAGT GGCAGTCGAA GACCATCACC AATGGTAGCC GTGTCTCCTG CATGCAGGTA CAGTATTGTC GGCTGCTCCT CTTTGCTCTG ATAGTGCTCG ATTGTTAGTC TTCGTTCGTG CCGTCACGGC TTATCTGTAG TCTGATACGG CTAGGCCGAT GTTCGATTTT AAACGTTTTC TGGGCATTTC TCCCGCCCAG TTGGTCGAGA ATAGAACTAT AGCGACATAC TCGCAATGAC CTGTTTCCTC GTTTGCTCTG TGTCAGGTGT GGGAACCTTA CAACAACCTG AAGTTCGAGA CCCTGTCATA CTTGCCAGCC TTGAGCCAGG ATGCTCTCGC CAAGCAGATC GACTACGTCA TCAAGAGCGG ATGGGCTCCA TGCATTGAAT TCGACGTGGT AAGTGAATGT CATCTCTTCC ATCTATTGCT CAGGTTGCCA TCGATTTTCG CCGCGTCGAC ACGATCTGGT TGCTGATGTA CTTTTCTTGA TTGCTATTCA CAGCAAGGGA CCGTCACTCG TGAGGGCAGC ACCATGCCCG GATACTACGA TGGTCGCTAC TGGACCATGT GGAAGTTACC CATGTTCGGA TGCACCGACT CTGCGTCCGT GTTGAGGGAG ATTGAGGAAT GCAAGAAGAT TTACGGAACC AAGTGTTACA TCAGATGCTT GGGATTCGAC AACACGAGAC AGGTGCAATG CGCCATGTTC ATCGTCCACC AGCCTACCCA GTAGATTTCG TACGTTCGCG TGAACGTTAG ATCATTCGTT GACACCACTG CCACAGATCA TGACACTGAT CTCAACACTC GAATTTAGTT TAGATACATT GGCTGTATAA TGTTGGACCT GGTGATTCAT CCGTCTGGGA ACAAAGTTGA TACAGACTTC TGTTCACCCG TTAGCGGATC CAGCAATGTA ATAAAGAACG TTGCGAGAAT CAACCCGCGA ACTTTCACCT GAAAGGAACT TTTGTGTTGT TCAGGCGAGA TGGTGTATTG ATCGTAAAGT GATTGTAATC AGAAAATGT |
mRNA UTR + CDS |
| >Mp4g09890.1 CAGTTTGAGG TATTTAGCTT TTCCCCAAGG CCTCCGAAAG CCTGTCGCAG ATTCCCACAA ACTTTCATCG AGAGCTGCAG CTTTCGACGA CGAGCGAGCG ATCAGCATCC CGCCATGGCT TCAATTGTCG CTTCCTCCGC CGTCGTCACC CCGGTCGCAG CTCTCGCTGC TTCCCGCACC ACTTCGACCT CCGGGGCCGT GTCCGTCAGC GCCTTCGCTG GCCTCAAGCC CGTCTCTGGC CAGAGCGAGT GGCAGTCGAA GACCATCACC AATGGTAGCC GTGTCTCCTG CATGCAGGTG TGGGAACCTT ACAACAACCT GAAGTTCGAG ACCCTGTCAT ACTTGCCAGC CTTGAGCCAG GATGCTCTCG CCAAGCAGAT CGACTACGTC ATCAAGAGCG GATGGGCTCC ATGCATTGAA TTCGACGTGC AAGGGACCGT CACTCGTGAG GGCAGCACCA TGCCCGGATA CTACGATGGT CGCTACTGGA CCATGTGGAA GTTACCCATG TTCGGATGCA CCGACTCTGC GTCCGTGTTG AGGGAGATTG AGGAATGCAA GAAGATTTAC GGAACCAAGT GTTACATCAG ATGCTTGGGA TTCGACAACA CGAGACAGGT GCAATGCGCC ATGTTCATCG TCCACCAGCC TACCCAGTAG ATTTCGTACG TTCGCGTGAA CGTTAGATCA TTCGTTGACA CCACTGCCAC AGATCATGAC ACTGATCTCA ACACTCGAAT TTAGTTTAGA TACATTGGCT GTATAATGTT GGACCTGGTG ATTCATCCGT CTGGGAACAA AGTTGATACA GACTTCTGTT CACCCGTTAG CGGATCCAGC AATGTAATAA AGAACGTTGC GAGAATCAAC CCGCGAACTT TCACCTGAAA GGAACTTTTG TGTTGTTCAG GCGAGATGGT GTATTGATCG TAAAGTGATT GTAATCAGAA AATGT |
CDS |
| >Mp4g09890.1 ATGGCTTCAA TTGTCGCTTC CTCCGCCGTC GTCACCCCGG TCGCAGCTCT CGCTGCTTCC CGCACCACTT CGACCTCCGG GGCCGTGTCC GTCAGCGCCT TCGCTGGCCT CAAGCCCGTC TCTGGCCAGA GCGAGTGGCA GTCGAAGACC ATCACCAATG GTAGCCGTGT CTCCTGCATG CAGGTGTGGG AACCTTACAA CAACCTGAAG TTCGAGACCC TGTCATACTT GCCAGCCTTG AGCCAGGATG CTCTCGCCAA GCAGATCGAC TACGTCATCA AGAGCGGATG GGCTCCATGC ATTGAATTCG ACGTGCAAGG GACCGTCACT CGTGAGGGCA GCACCATGCC CGGATACTAC GATGGTCGCT ACTGGACCAT GTGGAAGTTA CCCATGTTCG GATGCACCGA CTCTGCGTCC GTGTTGAGGG AGATTGAGGA ATGCAAGAAG ATTTACGGAA CCAAGTGTTA CATCAGATGC TTGGGATTCG ACAACACGAG ACAGGTGCAA TGCGCCATGT TCATCGTCCA CCAGCCTACC CAGTAG |
Protein |
| >Mp4g09890.1 MASIVASSAV VTPVAALAAS RTTSTSGAVS VSAFAGLKPV SGQSEWQSKT ITNGSRVSCM QVWEPYNNLK FETLSYLPAL SQDALAKQID YVIKSGWAPC IEFDVQGTVT REGSTMPGYY DGRYWTMWKL PMFGCTDSAS VLREIEECKK IYGTKCYIRC LGFDNTRQVQ CAMFIVHQPT Q |