| Database | ID | Description |
|---|---|---|
| SMART | SM00173 | ras_sub_4 |
| NCBIfam | TIGR00231 | small GTP-binding protein domain |
| FunFam | G3DSA:3.40.50.300:FF:002136 | Small rab-related GTPase |
| SMART | SM00176 | ran_sub_2 |
| Pfam | PF00071 | Ras family |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases |
| PANTHER | PTHR47977 | RAS-RELATED PROTEIN RAB |
| PRINTS | PR00449 | Transforming protein P21 ras signature |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. |
| Gene3D | G3DSA:3.40.50.300 | - |
| SMART | SM00175 | rab_sub_5 |
| SMART | SM00174 | rho_sub_3 |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. |
| ProSiteProfiles | PS51420 | small GTPase Rho family profile. |
| KEGG | K06234 | Ras-related protein Rab-23 |
| KOG | KOG4252 | GTP-binding protein; [T] |
| MapolyID | Mapoly0020s0116 | - |
| GO | GO:0003924 | GTPase activity |
| GO | GO:0016192 | vesicle-mediated transport |
| GO | GO:0005525 | GTP binding |
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpRAB23 | RAB GTPase | Published |
RAB GTPase secondarily lost in angiosperms; specifically expressed in M. polymorpha (RAB family analysis).
1 core 0 peripheral
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g23530.1 AAGTAAATCA ATCAAGATCC ATAGTTCCGG AATTTTAGTT GCAATTACTG CATTATTAAA ATGTGAGATG AATAAAAACC TTATGAGATT GTCAGCTTTA GTACCTGCCA GGACTTGTGT TCTATCAGCG GCTCCAATTG CCGATGAGAA ACATGTGACC TTCTCCTCCA CCCTCACTCC GGAAAGGACA TAAGGACGAG CCCGCTTTAA ATAATAAGCG CCCGCTTTTT TCTGATGTTT CATGGAGCAC TTCCATCTCG AGACGATTTA GGCTTTGGAA TCTGCAAATC TGTCGGAACA TGCGAGATCT GTCAAATGAA CTGCGTTCGT AATTTCCGGT TGATAATGTT AGCCCTCGCG CCACGGTTTC GCCGTGAGCA TCGGCTGTTA CCGGTCTTTC GGACTCATTC ATTACCTTTG GGGTCTGCGA CGATTGTCAG GGATTCGATT GTTCTGTCGG GCATCTAAGA TGCTCATAGA AACCATTCGT AGTGCTCTCT CGGTGAGAGT GCGTATGGGC CAGTCGAGCC GTCGGAGAGA TGTCACCTGG ACATGAAAGT GAGTCTCTAG GTTTTTTAAT GTATGAAAAT TCGAACCGCT GTAGCATCGC TAACAGTCAG TAGAATTTTG GCATACCCGC CGTGGAGAGT TTTGTTTGAA CTGCCTATTC TGTGCATTCA TCCGCAAGTG GATCGAGGCG GAACAACCGC TTGCGTCTCT GCTCGATGCG GCCTGAGATA TTCCCACATG AGCCCTGTGA ATCAAACAAT GTGCATCTAT GCTTCTTTCT TGCCGATCAG GACGATAAGA GCAGCTGTCA CACATCGCAG TCCTCAGTCT GTCGCGTATC ATGTGGAGTG ACAACTGTGA TTTGTACAAA GAAGTGATGA TGGGAATTAA CAGGTGGAGA TTGCATTGTT GTGTTCAGCG GGCTTTGACT CGACTTTAGC ACCGCAGCCC GGATTGGCCT CGTCAAATTG TCGTTTTCTT GGAAGACATG GAGATCCTGA TGCAACCTGC CAATAAGGCG GAGACTCACC AGAAGGTCAA GACCCAACGG AGACAGGTAT CCGACGCGGA ATGATAGAGT GCGCTAAGCG GTGACATCAT GCTGTCGATG CAGGAAGAAG ACTTCGAAAG TAAATATTCT TGCGTAACAA ATGATGTATC TCACAAATTC CTCTTGCGTG CTCTTTCGTG TTGCAAAGTT GCCCAGCCGA ACTACCTTTA GATACAAAAC GAACGAGCTT CTCCTGTCGG CGAAGTCGAA TGCGGTTGAG CATATTTTAT TGTTGCCGAG TTTGAACAAA AAAATCATGG AAATTATTCT CCAAAGAATG TGGCTAACAA CGGAATAATA CGCTCTGAGT GCGTCACCGA AGCTCCATGG ACTGAGCACA ATTTCGATCT GTATTAGCAA CTACAGTCCA GCCGTATACT ACATTGTTGG CTAGGTACTT AGTGGCTGGC GGCCAATCTT GGTTTTTGGC AAGGAGGCCT GAGTAGGACT CACGTTCCTT GTGAACATGG CGGTGTGCAG GAGAAGTGAA AGTTGTTGTG GTTGGAAATG GATGTGTTGG AAAGACGAGT ATGATTCGGC AATTTTGCAA AGGCGTTTAC GCTAACGAGT ACAAGAAGAC CATTGGCGTA GATTTTTTGG AAAAGCTTCA GTAAGAGACT TCAACTTCCC AATGCGATGT GATCTCAAAA TATACACCTC CCTGCGAAGT TTCGCTCGGA ATTTCAGATT AAGATCAAAT TCACTGAATG AACATTGGAA AGAAAGAAGC ATAATGCTTT ATCTGAAATC TGAGGACCCA GGCCTTCACC GGGATTCCAC AATTCTGAGA GCAGACATGA GGTGATTTTG ACACAAATTA TAAGAAAGGA TAATTCTGCG AGACAAGTTT AACTAGATCT GCTACCCAAA GCGTTGCAGG TTTGTAAGAG GCTTAGACGA GGAAGTGAAG ATGATGCTCT GGGATACTGC AGGGCAGGAG CAGTTTCATG CTTTGACTCG GGCTTATTAT CGAGGTGAGT CTTGACTGTT CTTGCCTCAG GTCTGGCTTT TGGTCTTGTC ACATAAGGAA AGTTTCTTAC AACGCACAGT GCGGCGTGGT TTCTGTATTC AGGTGCTAGG GCTGCTGCCT TGTGTTTTTC TACGATCGAC AGGGATTCCT TTGAGGCAAT TAGGACTTGG AAGGAAAAGG TGCCAGATCC CTCCCCAGAC TTCTCCGGCC TCCCCATAAC TGACCCTGCA CTAAAATCAT CCTGGTTAAC CAATGGCACC AATGGCACCT GTTACAGGTC GAAGAGGAGT GCGGGCAGAT TCCGATGGTC TTGGTTCAAA ACAAAGTTGA TCTCTTGGAG AATGCCGTCG TCTCTAGGTG TGTGATCTCC TGACCGCATG CTCAATTTCC TTCGTCTTCC GGTGTATGAG GAGTGCTTCA GATATTATTA CCGGACTGCA ATCATTACCA TCAACAACGG AAACCTCTTC AATCTTTTGA TGTGACAATG GCGGGAAGCA AGTCCTAATT CACGCACTTC ATGCATGTTG CAATAATTAA AATAAACTGG ATGGTTGTAA GAAACATTCA GTGCAGGAAA AACTGAAAAT CTGATCATCT GAAAATCAAA CTAAGGCAAG ACAGCAATAA CGGATCCATT CGACACCCCT GCAGAAAATT TCTCTTGCGC AGGACGTATT TAGACAGAGT GACAAATCCC TGCACTTTGG GACATGGGAG ATAGTCTCCG AGGTATGAAT CTCGTTGGGA TGCTTCGGTT TGTCTTCGAT CGTAGACGTT CTGACACCAT CCCCATCTCG CTGTGTTCTC ATGATACTCT GTAGGCAAGA GGCAGAAGAT TTAGCGACTG AACTAGGACT CCGATTTTAT CGAATCTGTG TTAAGGAGAA TCTCTATGTT GCTGACGGTA ATTGAATCCA TCCAATGCGC CTCGGTTATC TTCAGTGCTT TGCTCTATTT CTACGCATTT GTTATTCGAT TTTCAGTTTG GAGAAGTCAT ATTTTTTCTT CATGTTTCCT ATTGCCAGTG TTTGAATACT TGGCGGAGAT GTACCTGCAG AAGGACATGC GTATCTACCA TTGCCAACCG AGACCTAACA TTAGTGAGTT TCAAATCGCA ACAGATCTTT TGTTATCCCA GCATCAGCCA CTTCTTCAAA GCTCTCCCAG CTTTGCTTCC TTCTGTCGAT GTCTTCTTGT TTGTCCCTGG AACGTGCCGA GACTTCAGAA TGCTTTTACT TTACATTCTA TAATCTATGA ATTGTGTACC ACATTTTTCA GCCAAGGCGG TTGCTTCGAG GATTGCAACT TCTGCGCCAC CGCAAGTTGA CATGAAAGTC GACACCGTTT GTAAAAGATC GAAAGTCATC AACATCAGAA AGAGGAGGAG GCGCAGATTG CAGTCCGAGT GTTCAATTTT GTAGCTGCCC CATTTCCTCA TCCTCAAACT TGAAGTCCAC TCCCATCTAC AGACCCTCAA TGTGGATCGA AGTTTGTGAC ATCTTTTCGT TGAGCTGATT GGAGGAAAGC AGCAAACCGA AGTTTAACAG AAGCTAATCA TTCCCTCCTT CTGCCACCTT TCAGCATCCT TCCCACTGTG ATCTTCTAGG GTCCGTGCGA TACTCGTGTG CATCGATCTG CAAAGATCCG ATGGCCGATG CCCATTTGTA AAGCTCCTGT CAAATTCGCT ACGTTTCACA TCATGGGCTT CAAAAGTTGT ATTTTCGAAA AAGGGTGAAT TTGTCCCAGT TCCAAACTTC TTCTTTACTC GGGTAAGAGT CAACATCTGC AACTGTGAGT GGAAAATTAG GAGTGATTTG ACTTCTAGTG CCAAAATTGG GAAGAATAAA ACATGCACAA TTGTCTACAC ATACTTTCAT GGGAAACCAA ATCCTTTCGT CGCACGGTCA CTATCACGTT GGAGCACTCA TCTCAACCTT GAACGCTGAG AGAAAAGGCA GTGACCGGGA CATGCAAAAA GTGAGGGGAT GTGACGGACG TTGTGCACCA ATGTTCAGCC TAAAGTTTGT GAAGCGAATG AAACCTATCT ACGCACCGTA CTTCTGCACC AGAGCAAAAA GCACATCCAT GTGTGGGCAA AGTATCGGAG CTCACCCTCT GTTCCTGTCC TCACGTGGCG AGGACTGACA TCGTATCAAC CGAATGTTTA CCATCGGTTC CAGAAATTTA CTTCTTAGTG GAATGGATAA AGTCGAAGAG ACTAGTGCAG ATAACGTTCA ACTAGTTGAC TGGTACAATT TTCTGGTAGC CAGATACATT CAGCGAGTTT TGGCTGTTTT TGTTCCCGTT TCCTCTCGGA GTATCTTGAT CTCTTCATTC CCTTTTAACA GAAGGCTACT GTATTTCAGC TTTCATGTCA CCTCGTGGAG TTTATACTCT AAAGTATCTT GCAAGTTCGA CGTCAACTTC TTGTAGCTGA TTTACTTTAT CTTACTTTAT CAACTGATCT TGCCAACCAG TACAACTTTG ACGGTAGATA TAGAACATGA AGGACTCACA GCAAGCCTGA AGGCAGAATT AAACATTTTT CCCACTATTG AGTGGTATTG AGATATATTT TACACACTCA GCAAGCATCG CC |
mRNA UTR + CDS |
| >Mp4g23530.1 AAGTAAATCA ATCAAGATCC ATAGTTCCGG AATTTTAGTT GCAATTACTG CATTATTAAA ATGTGAGATG AATAAAAACC TTATGAGATT GTCAGCTTTA GTACCTGCCA GGACTTGTGT TCTATCAGCG GCTCCAATTG CCGATGAGAA ACATGTGACC TTCTCCTCCA CCCTCACTCC GGAAAGGACA TAAGGACGAG CCCGCTTTAA ATAATAAGCG CCCGCTTTTT TCTGATGTTT CATGGAGCAC TTCCATCTCG AGACGATTTA GGCTTTGGAA TCTGCAAATC TGTCGGAACA TGCGAGATCT GTCAAATGAA CTGCGTTCGT AATTTCCGGT TGATAATGTT AGCCCTCGCG CCACGGTTTC GCCGTGAGCA TCGGCTGTTA CCGGTCTTTC GGACTCATTC ATTACCTTTG GGGTCTGCGA CGATTGTCAG GGATTCGATT GTTCTGTCGG GCATCTAAGA TGCTCATAGA AACCATTCGT AGTGCTCTCT CGGTGAGAGT GCGTATGGGC CAGTCGAGCC GTCGGAGAGA TGTCACCTGG ACATGAAACG GGCTTTGACT CGACTTTAGC ACCGCAGCCC GGATTGGCCT CGTCAAATTG TCGTTTTCTT GGAAGACATG GAGATCCTGA TGCAACCTGC CAATAAGGCG GAGACTCACC AGAAGGTCAA GACCCAACGG AGACAGGTAT CCGACGCGGA ATGATAGAGT GCGCTAAGCG GTGACATCAT GCTGTCGATG CAGGAAGAAG ACTTCGAAAG AGAAGTGAAA GTTGTTGTGG TTGGAAATGG ATGTGTTGGA AAGACGAGTA TGATTCGGCA ATTTTGCAAA GGCGTTTACG CTAACGAGTA CAAGAAGACC ATTGGCGTAG ATTTTTTGGA AAAGCTTCAG TTTGTAAGAG GCTTAGACGA GGAAGTGAAG ATGATGCTCT GGGATACTGC AGGGCAGGAG CAGTTTCATG CTTTGACTCG GGCTTATTAT CGAGGTGCTA GGGCTGCTGC CTTGTGTTTT TCTACGATCG ACAGGGATTC CTTTGAGGCA ATTAGGACTT GGAAGGAAAA GGTCGAAGAG GAGTGCGGGC AGATTCCGAT GGTCTTGGTT CAAAACAAAG TTGATCTCTT GGAGAATGCC GTCGTCTCTA GGCAAGAGGC AGAAGATTTA GCGACTGAAC TAGGACTCCG ATTTTATCGA ATCTGTGTTA AGGAGAATCT CTATGTTGCT GACGTGTTTG AATACTTGGC GGAGATGTAC CTGCAGAAGG ACATGCGTAT CTACCATTGC CAACCGAGAC CTAACATTAC CAAGGCGGTT GCTTCGAGGA TTGCAACTTC TGCGCCACCG CAAGTTGACA TGAAAGTCGA CACCGTTTGT AAAAGATCGA AAGTCATCAA CATCAGAAAG AGGAGGAGGC GCAGATTGCA GTCCGAGTGT TCAATTTTGT AGCTGCCCCA TTTCCTCATC CTCAAACTTG AAGTCCACTC CCATCTACAG ACCCTCAATG TGGATCGAAG TTTGTGACAT CTTTTCGTTG AGCTGATTGG AGGAAAGCAG CAAACCGAAG TTTAACAGAA GCTAATCATT CCCTCCTTCT GCCACCTTTC AGCATCCTTC CCACTGTGAT CTTCTAGGGT CCGTGCGATA CTCGTGTGCA TCGATCTGCA AAGATCCGAT GGCCGATGCC CATTTGTAAA GCTCCTGTCA AATTCGCTAC GTTTCACATC ATGGGCTTCA AAAGTTGTAT TTTCGAAAAA GGGTGAATTT GTCCCAGTTC CAAACTTCTT CTTTACTCGG GTAAGAGTCA ACATCTGCAA CTGTGAGTGG AAAATTAGGA GTGATTTGAC TTCTAGTGCC AAAATTGGGA AGAATAAAAC ATGCACAATT GTCTACACAT ACTTTCATGG GAAACCAAAT CCTTTCGTCG CACGGTCACT ATCACGTTGG AGCACTCATC TCAACCTTGA ACGCTGAGAG AAAAGGCAGT GACCGGGACA TGCAAAAAGT GAGGGGATGT GACGGACGTT GTGCACCAAT GTTCAGCCTA AAGTTTGTGA AGCGAATGAA ACCTATCTAC GCACCGTACT TCTGCACCAG AGCAAAAAGC ACATCCATGT GTGGGCAAAG TATCGGAGCT CACCCTCTGT TCCTGTCCTC ACGTGGCGAG GACTGACATC GTATCAACCG AATGTTTACC ATCGGTTCCA GAAATTTACT TCTTAGTGGA ATGGATAAAG TCGAAGAGAC TAGTGCAGAT AACGTTCAAC TAGTTGACTG GTACAATTTT CTGGTAGCCA GATACATTCA GCGAGTTTTG GCTGTTTTTG TTCCCGTTTC CTCTCGGAGT ATCTTGATCT CTTCATTCCC TTTTAACAGA AGGCTACTGT ATTTCAGCTT TCATGTCACC TCGTGGAGTT TATACTCTAA AGTATCTTGC AAGTTCGACG TCAACTTCTT GTAGCTGATT TACTTTATCT TACTTTATCA ACTGATCTTG CCAACCAGTA CAACTTTGAC GGTAGATATA GAACATGAAG GACTCACAGC AAGCCTGAAG GCAGAATTAA ACATTTTTCC CACTATTGAG TGGTATTGAG ATATATTTTA CACACTCAGC AAGCATCGCC |
CDS |
| >Mp4g23530.1 ATGCTGTCGA TGCAGGAAGA AGACTTCGAA AGAGAAGTGA AAGTTGTTGT GGTTGGAAAT GGATGTGTTG GAAAGACGAG TATGATTCGG CAATTTTGCA AAGGCGTTTA CGCTAACGAG TACAAGAAGA CCATTGGCGT AGATTTTTTG GAAAAGCTTC AGTTTGTAAG AGGCTTAGAC GAGGAAGTGA AGATGATGCT CTGGGATACT GCAGGGCAGG AGCAGTTTCA TGCTTTGACT CGGGCTTATT ATCGAGGTGC TAGGGCTGCT GCCTTGTGTT TTTCTACGAT CGACAGGGAT TCCTTTGAGG CAATTAGGAC TTGGAAGGAA AAGGTCGAAG AGGAGTGCGG GCAGATTCCG ATGGTCTTGG TTCAAAACAA AGTTGATCTC TTGGAGAATG CCGTCGTCTC TAGGCAAGAG GCAGAAGATT TAGCGACTGA ACTAGGACTC CGATTTTATC GAATCTGTGT TAAGGAGAAT CTCTATGTTG CTGACGTGTT TGAATACTTG GCGGAGATGT ACCTGCAGAA GGACATGCGT ATCTACCATT GCCAACCGAG ACCTAACATT ACCAAGGCGG TTGCTTCGAG GATTGCAACT TCTGCGCCAC CGCAAGTTGA CATGAAAGTC GACACCGTTT GTAAAAGATC GAAAGTCATC AACATCAGAA AGAGGAGGAG GCGCAGATTG CAGTCCGAGT GTTCAATTTT GTAG |
Protein |
| >Mp4g23530.1 MLSMQEEDFE REVKVVVVGN GCVGKTSMIR QFCKGVYANE YKKTIGVDFL EKLQFVRGLD EEVKMMLWDT AGQEQFHALT RAYYRGARAA ALCFSTIDRD SFEAIRTWKE KVEEECGQIP MVLVQNKVDL LENAVVSRQE AEDLATELGL RFYRICVKEN LYVADVFEYL AEMYLQKDMR IYHCQPRPNI TKAVASRIAT SAPPQVDMKV DTVCKRSKVI NIRKRRRRRL QSECSIL |