Mp5g20910
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Pfam | PF09753 | Membrane fusion protein Use1 |
| PANTHER | PTHR13050 | USE1-LIKE PROTEIN |
| KEGG | K08507 | unconventional SNARE in the endoplasmic reticulum protein 1 |
| MapolyID | Mapoly0058s0071 | - |
| GO | GO:0005783 | endoplasmic reticulum |
| GO | GO:0031201 | SNARE complex |
| GO | GO:0005484 | SNAP receptor activity |
| GO | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpUSE1B | Ortholog of Arabidopsis USE1 genes | Published |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g20910 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g20910.1 AACAATTCTT GGGCTTGAGT GCGGACGAAG CATTTGCGAA TGCAATTTTT CCCTGGTCTC AATTTTGTAC CCCACAATAT CGACGAGATT GAAATCAAGC TGCCAGTCGA CATCCGAAAG CTGCCAGCTT TCGGATCCGA GCCGTGTTCT CCCCGTGGAG ACCTGGAATT GCAATCGTAG GTTGCAGAGC GATGAAGCAG GTGCAGAGGA GAACGCTGGA TCGCTTTTCG TCAAGCACTT TGAATTCATG GATATCAGAG AGATAGAGAG AGTGTCACTT GTTTCTGTGA AGAATTTCTG CAATGATATG TCACGGAAGA TCAGAAGACA CGAGGTTCCG ATAAGAGGTA TTTCATTCTT CGTAGCTACG CAGTCTCGCT TCTACTATTT TTGTCACCCG TTCAGAAACG CGCTGGTTCA GCTCGCGATT GCGCAGCCGA TCCCTTTCTT GTTCTTTTCT TGTCATGTTT AGGTGTACGT GCCATTTTAT ACTCAAGAGA TGAGTAATTG AATTTGTAGC TTGCTTAATA TTTCAGCTCA AATTTCAGTC GGTGAAGGTT TGCTGTCGTT AATCGGATGA ATGGTCCCTC GTGTGTTGCT TTCTTCTAGG GTATCATTTG TAGGGTTGCA CTAAAGTATC CTTTGCCCCC AACTGAAGTA TCTGTAATTG CATTAGTGAT CATGCCTTTC AGCATATAGC AAATCGGATG TGAATGAAAC TCTTCAACTT GGGGATGCGT GATGAATGAA GCTGCTAGTT CTTGTTGATT TTTTTCTCCG TACTTTCTTC GTCTTCTTCT TTCGATGAAA AAACCAGAAT TGACCAAAAT CTGTTTTTTT AATGATCCCT CATAGCCATC TGAGTTGGAT GTATCAGAAA TGTTTCTTAG AGCTGGCGTA CAGACATTGA TTGGATGACG TGCTCTCACA CCTTGTTTTC ATGACAGGAA CGGAGGCAGC CAAAAGCATA GTCTGCATTT TGTAGACGAA TTTTCCAAGC GGATCACTGC TGATATAGCT ACACGCTTCT TTCAGCACCT TGAATTGCTG GAATCTATTA CTGCTCAGCA TTGTCGAGCT GGAGTTTAAG AAAGGCAAGT ATGATACTTA GTAGAGCAGA GATAAGGCTG AGGAGATTGC TGGCTGCGGT TCCACAGCAG ACGAACAAAC ACAAGCAGGT ACATTACGTC ACCACATTGA AGGAGCTTCT GGCCACTTTG AAGAAAGAAG CTGCACAATC GAGCCATTCC ACTCTCATTG AAGCTAAAGC AGAAGTCTAT TCTAGGTACA TTGAAGAAAT GAGTCACAAA CTTGATGCCT CCAGGATGGA GGATGTTTGG GATTCCCTGG GCTCCGAGAG AGGTCCTGAA GGAAGTGATC AGTGTTCAAC CTCTAGTTGT GTGAAGGAGC TGGCTCATGT GCCATCAACT TCAGATCTGC CATTATTTCC ATCATGCCTA AAGAGGAAAC ATTCACCTGA TCCTCAGCTA CTCTTGAGTG GCGAGGTCGA AGAATCAAAC CTTGCAGACA CCTTTGAGGC TGACATTGCA ATGAAAAAGG TTCGTGTAGA TTTTAACGAA TACGAGGCTA AAAGTTCAGA GGAGCCTATG CACCTGGAGC AGGAGGTCCA GAGTGTAGAA AAGTCAAGAC AGGAAGTCAG TAGAATCGAT GCAGCTGAAG TTTCATATGA GCCTCAATCT CTGGAGTTGG AGGCTGAAAA TGCACTAAAG GCACGACAGG AAGAGGGTAC AGATAAAGTT GTTAGCGAAA CGTCGGCAAT TGTTAGAAAG CTGGAGTGCG AGATTCCAGA TGTAGTAGAG TGGAGTTACA CAGGGAGTAG AGAAGAAGAG GTTGAGCGTT TAGACAGTGA TTCTCGTTTG TACATTAGTA AACACCAAAT AGAACAGGAA AAGTTAGTCA GTGAAATGCT ACTTCTGACG GAGCATATCA AGGAGAGCAG TCTCCTGCTA GGCAGTAGTT TACATGTTAC CGAGGAATTA TTGGATTCGT CAGAGATGAC TATCAGGCAC TGCCTCTCAG CCACGACATC AGCAAACATG AAAATTGGGG AGCTTTTTAC CCGCTCTCAG ATACGAGATT GCGGATGCGT CACCTGGGTG AGTTTGTTCC TCATGTACTT GACATTTCTG ACTATGGTCG TCATTATTCG TCTCACTTGA ATCGGACACT CGACACAATG AGCTGATGTT TGTTTCGGAG GCAGTACCCT TTGCCGCCCC TTGATCTGGA TTTGTTCCCG G |
mRNA UTR + CDS |
| >Mp5g20910.1 AACAATTCTT GGGCTTGAGT GCGGACGAAG CATTTGCGAA TGCAATTTTT CCCTGGTCTC AATTTTGTAC CCCACAATAT CGACGAGATT GAAATCAAGC TGCCAGTCGA CATCCGAAAG CTGCCAGCTT TCGGATCCGA GCCGTGTTCT CCCCGTGGAG ACCTGGAATT GCAATCGTAG GTTGCAGAGC GATGAAGCAG GTGCAGAGGA GAACGCTGGA TCGCTTTTCG TCAAGCACTT TGAATTCATG GATATCAGAG AGATAGAGAG AGTGTCACTT GTTTCTGTGA AGAATTTCTG CAATGATATG TCACGGAAGA TCAGAAGACA CGAGGTTCCG ATAAGAGGAA CGGAGGCAGC CAAAAGCATA GTCTGCATTT TGTAGACGAA TTTTCCAAGC GGATCACTGC TGATATAGCT ACACGCTTCT TTCAGCACCT TGAATTGCTG GAATCTATTA CTGCTCAGCA TTGTCGAGCT GGAGTTTAAG AAAGGCAAGT ATGATACTTA GTAGAGCAGA GATAAGGCTG AGGAGATTGC TGGCTGCGGT TCCACAGCAG ACGAACAAAC ACAAGCAGGT ACATTACGTC ACCACATTGA AGGAGCTTCT GGCCACTTTG AAGAAAGAAG CTGCACAATC GAGCCATTCC ACTCTCATTG AAGCTAAAGC AGAAGTCTAT TCTAGGTACA TTGAAGAAAT GAGTCACAAA CTTGATGCCT CCAGGATGGA GGATGTTTGG GATTCCCTGG GCTCCGAGAG AGGTCCTGAA GGAAGTGATC AGTGTTCAAC CTCTAGTTGT GTGAAGGAGC TGGCTCATGT GCCATCAACT TCAGATCTGC CATTATTTCC ATCATGCCTA AAGAGGAAAC ATTCACCTGA TCCTCAGCTA CTCTTGAGTG GCGAGGTCGA AGAATCAAAC CTTGCAGACA CCTTTGAGGC TGACATTGCA ATGAAAAAGG TTCGTGTAGA TTTTAACGAA TACGAGGCTA AAAGTTCAGA GGAGCCTATG CACCTGGAGC AGGAGGTCCA GAGTGTAGAA AAGTCAAGAC AGGAAGTCAG TAGAATCGAT GCAGCTGAAG TTTCATATGA GCCTCAATCT CTGGAGTTGG AGGCTGAAAA TGCACTAAAG GCACGACAGG AAGAGGGTAC AGATAAAGTT GTTAGCGAAA CGTCGGCAAT TGTTAGAAAG CTGGAGTGCG AGATTCCAGA TGTAGTAGAG TGGAGTTACA CAGGGAGTAG AGAAGAAGAG GTTGAGCGTT TAGACAGTGA TTCTCGTTTG TACATTAGTA AACACCAAAT AGAACAGGAA AAGTTAGTCA GTGAAATGCT ACTTCTGACG GAGCATATCA AGGAGAGCAG TCTCCTGCTA GGCAGTAGTT TACATGTTAC CGAGGAATTA TTGGATTCGT CAGAGATGAC TATCAGGCAC TGCCTCTCAG CCACGACATC AGCAAACATG AAAATTGGGG AGCTTTTTAC CCGCTCTCAG ATACGAGATT GCGGATGCGT CACCTGGGTG AGTTTGTTCC TCATGTACTT GACATTTCTG ACTATGGTCG TCATTATTCG TCTCACTTGA ATCGGACACT CGACACAATG AGCTGATGTT TGTTTCGGAG GCAGTACCCT TTGCCGCCCC TTGATCTGGA TTTGTTCCCG G |
CDS |
| >Mp5g20910.1 ATGATACTTA GTAGAGCAGA GATAAGGCTG AGGAGATTGC TGGCTGCGGT TCCACAGCAG ACGAACAAAC ACAAGCAGGT ACATTACGTC ACCACATTGA AGGAGCTTCT GGCCACTTTG AAGAAAGAAG CTGCACAATC GAGCCATTCC ACTCTCATTG AAGCTAAAGC AGAAGTCTAT TCTAGGTACA TTGAAGAAAT GAGTCACAAA CTTGATGCCT CCAGGATGGA GGATGTTTGG GATTCCCTGG GCTCCGAGAG AGGTCCTGAA GGAAGTGATC AGTGTTCAAC CTCTAGTTGT GTGAAGGAGC TGGCTCATGT GCCATCAACT TCAGATCTGC CATTATTTCC ATCATGCCTA AAGAGGAAAC ATTCACCTGA TCCTCAGCTA CTCTTGAGTG GCGAGGTCGA AGAATCAAAC CTTGCAGACA CCTTTGAGGC TGACATTGCA ATGAAAAAGG TTCGTGTAGA TTTTAACGAA TACGAGGCTA AAAGTTCAGA GGAGCCTATG CACCTGGAGC AGGAGGTCCA GAGTGTAGAA AAGTCAAGAC AGGAAGTCAG TAGAATCGAT GCAGCTGAAG TTTCATATGA GCCTCAATCT CTGGAGTTGG AGGCTGAAAA TGCACTAAAG GCACGACAGG AAGAGGGTAC AGATAAAGTT GTTAGCGAAA CGTCGGCAAT TGTTAGAAAG CTGGAGTGCG AGATTCCAGA TGTAGTAGAG TGGAGTTACA CAGGGAGTAG AGAAGAAGAG GTTGAGCGTT TAGACAGTGA TTCTCGTTTG TACATTAGTA AACACCAAAT AGAACAGGAA AAGTTAGTCA GTGAAATGCT ACTTCTGACG GAGCATATCA AGGAGAGCAG TCTCCTGCTA GGCAGTAGTT TACATGTTAC CGAGGAATTA TTGGATTCGT CAGAGATGAC TATCAGGCAC TGCCTCTCAG CCACGACATC AGCAAACATG AAAATTGGGG AGCTTTTTAC CCGCTCTCAG ATACGAGATT GCGGATGCGT CACCTGGGTG AGTTTGTTCC TCATGTACTT GACATTTCTG ACTATGGTCG TCATTATTCG TCTCACTTGA |
Protein |
| >Mp5g20910.1 MILSRAEIRL RRLLAAVPQQ TNKHKQVHYV TTLKELLATL KKEAAQSSHS TLIEAKAEVY SRYIEEMSHK LDASRMEDVW DSLGSERGPE GSDQCSTSSC VKELAHVPST SDLPLFPSCL KRKHSPDPQL LLSGEVEESN LADTFEADIA MKKVRVDFNE YEAKSSEEPM HLEQEVQSVE KSRQEVSRID AAEVSYEPQS LELEAENALK ARQEEGTDKV VSETSAIVRK LECEIPDVVE WSYTGSREEE VERLDSDSRL YISKHQIEQE KLVSEMLLLT EHIKESSLLL GSSLHVTEEL LDSSEMTIRH CLSATTSANM KIGELFTRSQ IRDCGCVTWV SLFLMYLTFL TMVVIIRLT |