Mp6g18180



Description

Annotation

Database ID Description
FunFam G3DSA:3.40.50.150:FF:000108 DNA (cytosine-5)-methyltransferase
NCBIfam TIGR00675 DNA (cytosine-5-)-methyltransferase
FunFam G3DSA:3.40.50.150:FF:000128 DNA (cytosine-5)-methyltransferase
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39
Gene3D G3DSA:2.30.30.490 -
MobiDBLite mobidb-lite consensus disorder prediction
ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature.
Pfam PF00145 C-5 cytosine-specific DNA methylase
Pfam PF12047 Cytosine specific DNA methyltransferase replication foci domain
ProSiteProfiles PS51679 C-5 cytosine-specific DNA methylase (Dnmt) domain profile.
Gene3D G3DSA:3.90.120.10 DNA Methylase, subunit A, domain 2
PANTHER PTHR10629 CYTOSINE-SPECIFIC METHYLTRANSFERASE
PIRSF PIRSF037404 DNMT1
Pfam PF01426 BAH domain
PRINTS PR00105 Cytosine-specific DNA methyltransferase signature
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases
SMART SM00439 BAH_4
CDD cd04708 BAH_plantDCM_II
ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site.
ProSiteProfiles PS51038 BAH domain profile.
FunFam G3DSA:3.90.120.10:FF:000002 DNA (cytosine-5)-methyltransferase
KEGG K00558 DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
KOG KOG0919 C-5 cytosine-specific DNA methylase; C-term missing; [K]
MapolyID Mapoly0038s0027 -
GO GO:0008168 methyltransferase activity
GO GO:0003886 DNA (cytosine-5-)-methyltransferase activity
GO GO:0005634 nucleus
GO GO:0010424 obsolete DNA methylation on cytosine within a CG sequence
GO GO:0090116 obsolete C-5 methylation of cytosine
GO GO:0010216 obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding

Nomenclature

Gene symbol Product Transcript ID Status
MpMET DNA methyltransferase Published

Associated Literature (AI-based literature mining, Beta-version)

DNA METHYLTRANSFERASE family protein that maintains methylation in the CG context. Its expression was profiled across the life cycle; it showed increased expression in the antheridiophore but relatively low expression in archegoniophore tissues.

2 core 1 peripheral

Ikeda, Y., et al. (2018) · Plant and Cell Physiology  research experimental subject
METHYLTRANSFERASE1 (MET1) ortholog maintaining CG DNA methylation; Mpmet loss-of-function disorganizes cell division and reveals non-CG methylation regulation in this basal land plant.
Schmid, M. W., et al. (2018) · Genome Biology  research experimental subject
DNA METHYLTRANSFERASE family protein that maintains methylation in the CG context. Its expression was profiled across the life cycle; it showed increased expression in the antheridiophore but relatively low expression in archegoniophore tissues.
Hisanaga, T., et al. (2023a) · Current Biology  research experimental comparator
DNA methyltransferase; compared with PRC2/H3K27me3 silencing.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g18180.1 chr6:24106348..24117027 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g18180.2 chr6:24105198..24117027 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g18180.3 chr6:24105359..24116666 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.