Mp1g08030



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd15844 SNARE_syntaxin5
ProSiteProfiles PS50192 t-SNARE coiled-coil homology domain profile.
Pfam PF11416 Syntaxin-5 N-terminal, Sly1p-binding domain
Gene3D G3DSA:1.20.58.70 -
PANTHER PTHR19957 SYNTAXIN
Pfam PF05739 SNARE domain
SMART SM00397 tSNARE_6
SUPERFAMILY SSF47661 t-snare proteins
KEGG K08490 syntaxin 5
KOG KOG0812 SNARE protein SED5/Syntaxin 5; [U]
MapolyID Mapoly0036s0047 -
GO GO:0000149 SNARE binding
GO GO:0016192 vesicle-mediated transport
GO GO:0006906 vesicle fusion
GO GO:0012505 endomembrane system
GO GO:0031201 SNARE complex
GO GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
GO GO:0006886 intracellular protein transport
GO GO:0000139 Golgi membrane
GO GO:0048278 vesicle docking
GO GO:0016021 membrane
GO GO:0016020 membrane
GO GO:0005484 SNAP receptor activity

Nomenclature

Gene symbol Product Transcript ID Status
MpSYP3 Ortholog of Arabidopsis SYP3 genes Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis SYP3 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpSYP3 driven by the cauliflower mosaic virus 35S promoter is localized to the Golgi apparatus. (from nomenclature)

0 core 1 peripheral

Wachananawat, B., et al. (2020) · Frontiers in Plant Science  research experimental tool
Cis-Golgi marker (pro35S:MpSYP3-Citrine) that co-localized with MpRRT1-tagRFP, establishing MpRRT1's cis-Golgi localization; not characterized itself.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g08030.1 chr1:8620556..8626500 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g08030.2 chr1:8620462..8626500 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.