Mp1g11940



Description

Annotation

Database ID Description
SUPERFAMILY SSF51445 (Trans)glycosidases
FunFam G3DSA:3.20.20.300:FF:000003 Beta-D-glucan exohydrolase isoenzyme ExoI
Gene3D G3DSA:3.20.20.300 -
PRINTS PR00133 Glycosyl hydrolase family 3 signature
Gene3D G3DSA:3.40.50.1700 -
PANTHER PTHR30620 PERIPLASMIC BETA-GLUCOSIDASE-RELATED
SUPERFAMILY SSF52279 Beta-D-glucan exohydrolase, C-terminal domain
FunFam G3DSA:3.40.50.1700:FF:000002 Glycosyl hydrolase family protein
Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain
Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain
KEGG K05349 beta-glucosidase [EC:3.2.1.21]
MapolyID Mapoly0014s0035 -
GO GO:0009251 glucan catabolic process
GO GO:0005975 carbohydrate metabolic process
GO GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO GO:0008422 beta-glucosidase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpGH3.1 Cell wall related protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

Glycoside hydrolase family 3 (GH3) protein detected by mass spectrometry as a major abundant cell wall protein (Table 3).

1 core 0 peripheral

Kolkas, H., et al. (2022) · Frontiers in Plant Science  research experimental subject
Glycoside hydrolase family 3 (GH3) protein detected by mass spectrometry as a major abundant cell wall protein (Table 3).

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g11940.1 chr1:12389305..12394234 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g11940.2 chr1:12389305..12394234 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g11940.3 chr1:12389305..12394234 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.