Mp1g21450



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF46689 Homeodomain-like
Gene3D G3DSA:1.20.58.1880 -
Gene3D G3DSA:1.10.10.60 -
PANTHER PTHR47340 DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN
Coils Coil Coil
SMART SM00717 sant
CDD cd00167 SANT
ProSiteProfiles PS51293 SANT domain profile.
ProSiteProfiles PS50090 Myb-like domain profile.
Pfam PF00249 Myb-like DNA-binding domain
KOG KOG1878 Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains; C-term missing; [K]
KOG KOG1194 Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains; N-term missing; C-term missing; [K]
MapolyID Mapoly0001s0480 -

Nomenclature

Gene symbol Product Transcript ID Status
MpRR-MYB1 transcription factor, MYB Published

Associated Literature (AI-based literature mining, Beta-version)

Salinity-responsive MYB-related transcription factor, the single strongly downregulated TF by RNA-Seq (logFC -4.86, FDR 0.0405). qRT-PCR validation was inconsistent with RNA-Seq, indicating marginal reliability.

1 core 0 peripheral

Tanaka, H., et al. (2018) · Plant Biotchnology  research experimental subject
Salinity-responsive MYB-related transcription factor, the single strongly downregulated TF by RNA-Seq (logFC -4.86, FDR 0.0405). qRT-PCR validation was inconsistent with RNA-Seq, indicating marginal reliability.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g21450.1 chr1:22438723..22447933 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21450.2 chr1:22438723..22447945 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21450.3 chr1:22438723..22447933 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp1g21450.4 chr1:22438723..22446765 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.