Mp1g27170



Description

Annotation

Database ID Description
FunFam G3DSA:3.30.40.10:FF:000187 E3 ubiquitin-protein ligase ATL6
ProSiteProfiles PS50089 Zinc finger RING-type profile.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF13639 Ring finger domain
CDD cd16461 RING-H2_EL5-like
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SUPERFAMILY SSF57850 RING/U-box
SMART SM00184 ring_2
PANTHER PTHR46539 E3 UBIQUITIN-PROTEIN LIGASE ATL42
KEGG K10664 E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27]
KOG KOG4628 Predicted E3 ubiquitin ligase; N-term missing; [O]
MapolyID Mapoly0002s0161 -

Nomenclature

Gene symbol Product Transcript ID Status
MpACRE132 PAMP-responsive gene Provisional

Associated Literature (AI-based literature mining, Beta-version)

PAMP-responsive gene (from nomenclature)

0 core 3 peripheral

Kulshrestha, S., et al. (2022) · Journal of Experimental Botany  review citation background
ATL31 E3 ligase
Michavila S, Espinosa-Cores L, Kneeshaw S, Torres S, Siroka J, Zamarreno AM, Gonzalez-Zuloaga M, Garcia-Mina JM, Novak O, Solano R, Gimenez-Ibanez S. (2026) · Plant & cell physiology  research experimental background
Rapidly responsive defense gene detected in this paper's transcriptome.
Iwakawa, H., et al. (2021) · Plant & Cell Physiology  research experimental background
Avr/Cf-Elicited gene; immune-marker readout.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g27170.1 chr1:28352614..28357839 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.