Mp2g00710



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile.
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature.
FunFam G3DSA:2.130.10.10:FF:000440 Bromodomain and WD repeat-containing protein
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile.
CDD cd00200 WD40
Coils Coil Coil
SUPERFAMILY SSF47370 Bromodomain
Gene3D G3DSA:2.130.10.10 -
PANTHER PTHR16266 WD REPEAT DOMAIN 9
Pfam PF00439 Bromodomain
SMART SM00320 WD40_4
Pfam PF00400 WD domain, G-beta repeat
SMART SM00297 bromo_6
ProSiteProfiles PS50014 Bromodomain profile.
Gene3D G3DSA:1.20.920.10 -
SUPERFAMILY SSF50978 WD40 repeat-like
KOG KOG0644 Uncharacterized conserved protein, contains WD40 repeat and BROMO domains; C-term missing; [R]
KOG KOG0644 Uncharacterized conserved protein, contains WD40 repeat and BROMO domains; N-term missing; [R]
MapolyID Mapoly0028s0080 -
GO GO:0005634 nucleus
GO GO:0008360 regulation of cell shape
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0007010 cytoskeleton organization
GO GO:0005515 protein binding

Nomenclature

Gene symbol Product Transcript ID Status
MpBromo4 Chromatin related protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

A pre-ARF-related gene investigated as the evolutionary precursor lineage of ARFs. CRISPR/Cas9 Mpphip mutants were generated and showed no genetic or functional resemblance to MpARF1 or MpARF3, and structural alignment of its DD-AD region was compared with ARF.

1 core 0 peripheral

Hernández-García, J., et al. (2024a) · Nature Communications  research experimental subject
A pre-ARF-related gene investigated as the evolutionary precursor lineage of ARFs. CRISPR/Cas9 Mpphip mutants were generated and showed no genetic or functional resemblance to MpARF1 or MpARF3, and structural alignment of its DD-AD region was compared with ARF.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp2g00710.1 chr2:850553..868891 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g00710.2 chr2:850553..868891 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp2g00710.3 chr2:850553..862167 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.