Mp4g00040



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd18660 CD1_tandem
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile.
SMART SM00490 helicmild6
Pfam PF00271 Helicase conserved C-terminal domain
CDD cd18793 SF2_C_SNF
PANTHER PTHR45623 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
SUPERFAMILY SSF63748 Tudor/PWWP/MBT
CDD cd18659 CD2_tandem
CDD cd05162 PWWP
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
ProSiteProfiles PS50090 Myb-like domain profile.
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
CDD cd11660 SANT_TRF
SUPERFAMILY SSF54160 Chromo domain-like
SUPERFAMILY SSF46689 Homeodomain-like
ProSiteProfiles PS50013 Chromo and chromo shadow domain profile.
SMART SM00487 ultradead3
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
ProSiteProfiles PS50016 Zinc finger PHD-type profile.
ProSitePatterns PS01359 Zinc finger PHD-type signature.
Gene3D G3DSA:3.40.50.10810 -
Pfam PF00628 PHD-finger
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.
SMART SM00298 chromo_7
Pfam PF00385 Chromo (CHRromatin Organisation MOdifier) domain
SMART SM00184 ring_2
Pfam PF00176 SNF2-related domain
CDD cd15532 PHD2_CHD_II
Gene3D G3DSA:3.40.50.300 -
SMART SM01147 DUF1087_2
Pfam PF00855 PWWP domain
Gene3D G3DSA:2.40.50.40 -
Gene3D G3DSA:2.30.30.140 -
SMART SM00249 PHD_3
ProSiteProfiles PS50812 PWWP domain profile.
Pfam PF06465 CHD subfamily II, DUF1087
KOG KOG0384 Chromodomain-helicase DNA-binding protein; C-term missing; [K]
KOG KOG4299 PHD Zn-finger protein; C-term missing; [R]
KOG KOG1904 Transcription coactivator; C-term missing; [K]
MapolyID Mapoly0162s0017 -
GO GO:0005634 nucleus
GO GO:0005524 ATP binding
GO GO:0006338 chromatin remodeling
GO GO:0140658 ATP-dependent chromatin remodeler activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0000785 chromatin
GO GO:0003677 DNA binding
GO GO:0003682 chromatin binding
GO GO:0042393 histone binding

Nomenclature

Gene symbol Product Transcript ID Status
Mp1R-MYB20 transcription factor, MYB Published

Associated Literature (AI-based literature mining, Beta-version)

PICKLE-LIKE 2, a Marchantia PKL homolog. A CRISPR pll2 mutant was generated and showed growth defects and DEGs overlapping pll1/pll3. APA of Hi-C data showed TCP1-distal-targeted histone-modified regions were spatially aggregated in WT but dispersed in the pll2 mutant. MpPLL2 also interacts with MpTCP1, MpHY5 and MpPIF by Y2H.

1 core 0 peripheral

Song M, Wang Y, Ma T, Terzaghi W, He K, Wang H, Xu B, Jing Y, Lin R, Deng XW, Zhu D, Wang Y. (2025) · Nucleic acids research  research experimental subject
PICKLE-LIKE 2, a Marchantia PKL homolog. A CRISPR pll2 mutant was generated and showed growth defects and DEGs overlapping pll1/pll3. APA of Hi-C data showed TCP1-distal-targeted histone-modified regions were spatially aggregated in WT but dispersed in the pll2 mutant. MpPLL2 also interacts with MpTCP1, MpHY5 and MpPIF by Y2H.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g00040.1 chr4:85663..106188 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.