Mp4g13380



Description

Annotation

Database ID Description
ProSitePatterns PS00716 Sigma-70 factors family signature 2.
FunFam G3DSA:1.10.601.10:FF:000001 RNA polymerase sigma factor SigA
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
ProSitePatterns PS00715 Sigma-70 factors family signature 1.
Pfam PF04545 Sigma-70, region 4
Pfam PF04539 Sigma-70 region 3
Pfam PF00140 Sigma-70 factor, region 1.2
Gene3D G3DSA:1.10.10.10 -
CDD cd06171 Sigma70_r4
NCBIfam TIGR02997 RNA polymerase sigma factor, RpoD/SigA family
PIRSF PIRSF000767 Sigma_factor_SigC
PRINTS PR00046 Major sigma-70 factor signature
NCBIfam TIGR02937 sigma-70 family RNA polymerase sigma factor
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors
Gene3D G3DSA:1.10.601.10 RNA Polymerase Primary Sigma Factor
Pfam PF04542 Sigma-70 region 2
PANTHER PTHR30603 RNA POLYMERASE SIGMA FACTOR RPO
MapolyID Mapoly0214s0004 -
GO GO:0006352 DNA-templated transcription initiation
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0016987 sigma factor activity
GO GO:0003677 DNA binding
GO GO:0006355 regulation of DNA-templated transcription

Nomenclature

Gene symbol Product Transcript ID Status
MpSIG2 Ortholog of Arabidopsis SIG2 gene Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis SIG2 gene; MpSIG2 overexpression has an effect similar to that of MpSIG1 overexpression on the transcript levels of chloroplast genes. Citrine fused with the amino terminal sequence of MpSIG2 is transferred to chloroplasts. MpSIG2 transcript is induced by dark shift and decreased by light illumination. (from nomenclature)

0 core 2 peripheral

Bowman, J. L., et al. (2022) · Plant Cell  review citation comparator
Marchantia gene cited in Bowman et al. (2022) model-system review
Norizuki, T., et al. (2023) · Frontiers in Plant Biology  research experimental tool
Nucleus-encoded PEP subunit whose transit peptide was fused to sGFP as an alternative plastid marker.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp4g13380.1 chr4:17099353..17103606 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.