Mp6g00230



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:6.10.250.2940 -
Pfam PF00623 RNA polymerase Rpb1, domain 2
Pfam PF05000 RNA polymerase Rpb1, domain 4
Pfam PF04983 RNA polymerase Rpb1, domain 3
Gene3D G3DSA:2.40.40.20 -
SUPERFAMILY SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
Pfam PF04998 RNA polymerase Rpb1, domain 5
Gene3D G3DSA:3.30.1490.180 RNA polymerase ii
Gene3D G3DSA:1.10.132.30 -
Gene3D G3DSA:4.10.860.120 RNA polymerase II, clamp domain
Gene3D G3DSA:1.10.274.100 RNA polymerase Rpb1, domain 3
SMART SM00663 rpolaneu7
Pfam PF04997 RNA polymerase Rpb1, domain 1
PANTHER PTHR19376 DNA-DIRECTED RNA POLYMERASE
CDD cd02737 RNAP_IV_NRPD1_C
KOG KOG0260 RNA polymerase II, large subunit; C-term missing; [K]
MapolyID Mapoly0104s0044 -
GO GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO GO:0006351 DNA-templated transcription
GO GO:0001055 RNA polymerase II activity
GO GO:0005665 RNA polymerase II, core complex
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpNRPE1b Chromatin related protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

Chromatin related protein (from nomenclature)

0 core 1 peripheral

Ros-Moner, E., et al. (2024) · Nature Communications  research experimental background
Suppressed upon TMV infection; reported among RdDM pathway genes.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g00230.1 chr6:575982..588053 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp6g00230.2 chr6:575982..588053 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.