Mp8g08610



Description

Annotation

Database ID Description
PANTHER PTHR22891 EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
Gene3D G3DSA:2.170.260.10 paz domain
Pfam PF02171 Piwi domain
CDD cd02846 PAZ_argonaute_like
Gene3D G3DSA:3.40.50.2300 -
Gene3D G3DSA:3.30.420.10 -
ProSiteProfiles PS50821 PAZ domain profile.
SMART SM00950 Piwi_a_2
SUPERFAMILY SSF101690 PAZ domain
SMART SM01163 DUF1785_2
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS50822 Piwi domain profile.
Pfam PF16486 N-terminal domain of argonaute
SUPERFAMILY SSF53098 Ribonuclease H-like
Pfam PF16488 Argonaute linker 2 domain
SMART SM00949 PAZ_2_a_3
Pfam PF02170 PAZ domain
Pfam PF08699 Argonaute linker 1 domain
CDD cd04657 Piwi_ago-like
KEGG K11593 eukaryotic translation initiation factor 2C
KOG KOG1041 Translation initiation factor 2C (eIF-2C) and related proteins; [J]
MapolyID Mapoly0063s0058 -
GO GO:0004521 RNA endonuclease activity
GO GO:0003723 RNA binding
GO GO:0005515 protein binding
GO GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing
GO GO:0005737 cytoplasm
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpAGO9 miRNA biogenesis protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

miRNA biogenesis protein (from nomenclature)

0 core 2 peripheral

Hong, S.-F., et al. (2024) · Plant & Cell Physiology  research sequence comparator
ARGONAUTE9-like; AGO family member.
Ros-Moner, E., et al. (2024) · Nature Communications  research experimental background
Suppressed upon TMV infection; reported among RdDM/silencing genes.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp8g08610.1 chr8:11508488..11517692 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp8g08610.2 chr8:11511177..11517692 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.