Download Chain Files for Liftover

Chain files were created using transanno based on the genome alignment by minimap2.
You can convert your BED, GFF, or VCF files by liftover tools such as transanno, CrossMap, and UCSC Liftover.

FileName Description
tak1_v31.chain MpTak1_v7.1 --> JGI3.1
v71_v31.chain MpTak_v7.1 --> JGI3.1
tak1_tak2.chain MpTak1_v7.1 --> MpTak2_v7.1
v31_v61.chain JGI3.1 --> MpTak_v6.1
v71_tak1.chain MpTak_v7.1 --> MpTak1_v7.1
v61_v31.chain MpTak_v6.1 --> JGI3.1
tak1_v61.chain MpTak1_v7.1 --> MpTak_v6.1
tak1_v71.chain MpTak1_v7.1 --> MpTak_v7.1
tak2_tak1.chain MpTak2_v7.1 --> MpTak1_v7.1
v61_v71.chain MpTak_v6.1 --> MpTak_v7.1
v31_tak2.chain JGI3.1 --> MpTak2_v7.1
tak2_v61.chain MpTak2_v7.1 --> MpTak_v6.1
v71_v61.chain MpTak_v7.1 --> MpTak_v6.1
v31_tak1.chain JGI3.1 --> MpTak1_v7.1
v61_tak2.chain MpTak_v6.1 --> MpTak2_v7.1
v31_v71.chain JGI3.1 --> MpTak_v7.1
tak2_v31.chain MpTak2_v7.1 --> JGI3.1
v61_tak1.chain MpTak_v6.1 --> MpTak1_v7.1
tak2_v71.chain MpTak2_v7.1 --> MpTak_v7.1
v71_tak2.chain MpTak_v7.1 --> MpTak2_v7.1