Mp5g08310



Description

Annotation

Database ID Description
CDD cd10017 B3_DNA
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF02362 B3 DNA binding domain
SMART SM01019 B3_2
PANTHER PTHR31140 B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3
Gene3D G3DSA:2.40.330.10 -
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain
KEGG K09287 RAV-like factor
MapolyID Mapoly0086s0035 -
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpABI3A B3-domain transcription factor abscisic acid-insensitive 3 Published
MpB3-6 transcription factor, B3 Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis ABI3 (Mapoly0086s0035/Mp5g08310), a key regulator of ABA-triggered gemma dormancy. Its transcript was significantly reduced in Mpark1/2ge and Mpark1/3ge but only slightly in Mpark1ge, placing it downstream of B3-Rafs.

3 core 4 peripheral

Jahan, A., et al. (2022) · Frontiers in Plant Science  research experimental subject
Ortholog of Arabidopsis ABI3 (Mapoly0086s0035/Mp5g08310), a key regulator of ABA-triggered gemma dormancy. Its transcript was significantly reduced in Mpark1/2ge and Mpark1/3ge but only slightly in Mpark1ge, placing it downstream of B3-Rafs.
Eklund, D. M., et al. (2018) · Current Biology  research experimental subject
B3-domain ABA-responsive transcription factor (MpABI3A/B); EF1pro:MpABI3A activates downstream LEA/dormancy genes.
Tanaka, H., et al. (2018) · Plant Biotchnology  research experimental subject
Salinity-upregulated B3-family transcription factor (homolog of Arabidopsis ABI3), identified by RNA-Seq (logFC 1.37, lowest FDR 0.0054, most reliable). qRT-PCR confirmed the RNA-Seq expression pattern.
Tolopka, J. I., et al. (2024) · Plants  research citation background
Transcription factor cited from prior literature as affecting ABA responses in the vegetative thallus and controlling gemma dormancy; used to contextualize ABA pathway conservation, not experimentally tested here.
Khatun, N., et al. (2023a) · Physiologia Plantarum  research experimental comparator
ABA-responsive B3 TF (Mapoly0086s0035); ABA-signaling node.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp5g08310.1 chr5:11343070..11353462 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.