Mp6g17330



Description

Annotation

Database ID Description
PIRSF PIRSF015921 FA_sphingolip_des
PANTHER PTHR19353 FATTY ACID DESATURASE 2
ProSiteProfiles PS50255 Cytochrome b5 family, heme-binding domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00487 Fatty acid desaturase
SUPERFAMILY SSF55856 Cytochrome b5-like heme/steroid binding domain
Pfam PF00173 Cytochrome b5-like Heme/Steroid binding domain
Gene3D G3DSA:3.10.120.10 -
CDD cd03506 Delta6-FADS-like
SMART SM01117 Cyt_b5_2
KOG KOG4232 Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase; [I]
MapolyID Mapoly0184s0017 -
GO GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
GO GO:0006629 lipid metabolic process
GO GO:0016020 membrane
GO GO:0016491 oxidoreductase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpDES6 Δ6 fatty acid desaturase Published
MpFAD12 Secondary metabolism enzyme Provisional

Associated Literature (AI-based literature mining, Beta-version)

Δ6 fatty acid desaturase; MpDES6 mediates two Δ6-desaturation reactions, linoleic acid (LA; 18:2Δ9,12) to γ-linolenic acid (GLA;18:3Δ6,9,12) in the n-6 pathway, and α-linolenic acid (ALA; 18:3Δ9,12,15) to stearidonic acid (STA; 18:4Δ6,9,12,15) in the n-3 pathway. (from nomenclature)

1 core 1 peripheral

Kneeshaw, S., et al. (2022) · PNAS  research experimental subject
Δ6-desaturase in the EPA biosynthetic route. CRISPR Mpdes6 mutants (including double mutants) were analyzed for C20-OPDA and Δ4-dn-OPDA accumulation after wounding.
Liang, W., et al. (2024) · Plant Physiology  research citation background
Cited as the Delta-6-desaturase required for hexadecatrienoic acid (16:3) biosynthesis in the hexadecanoid pathway; no experimental work here.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g17330.1 chr6:22153482..22156686 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.