Mp3g19510



Description

Annotation

Database ID Description
NCBIfam TIGR01624 LRP1 C-terminal domain
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR31604 PROTEIN LATERAL ROOT PRIMORDIUM 1
Pfam PF05142 Domain of unknown function (DUF702)
NCBIfam TIGR01623 putative zinc finger domain, LRP1 type
MapolyID Mapoly0049s0083 -
GO GO:0005634 nucleus
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0045893 positive regulation of DNA-templated transcription

Nomenclature

Gene symbol Product Transcript ID Status
MpSHI Auxin related protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

Auxin related protein (from nomenclature)

0 core 5 peripheral

Melissa DÁ, Luis LJ, Eduardo FS, Annie EC, Domingo MÁ, Tom FJ, Jesús LR, Fernando OM, John BL, Mario AA, Cruz-Ramírez A. (2025) · Physiologia plantarum  research citation background
SHI-related gene noted in the MpANT co-expression cluster.
Flores-Sandoval, E., et al. (2015) · PLoS Genetics  other experimental tool
Its promoter (proMpSHI), expressed near the apical cell, was used to drive iaaL for tissue-specific auxin depletion (proMpSHI:iaaL caused irregular zig-zag gemma cup arrangement); MpSHI itself was not functionally characterized.
Lagerkrantz, U., et al. (2020) · Scientific Reports  research experimental tool
Apical-notch-active promoter used to drive iaaL expression (MpSHIpro:iaaL) to deplete auxin locally.
Flores-Sandoval, E., et al. (2018a) · New Phytologist  research experimental background
SHI gene (Mapoly0049s0083); promoter used.
Csicsely, E., et al. (2025) · The Plant Journal  research experimental background
Auxin-related (Mp3g19510); DE in Mpdcl1a.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp3g19510.1 chr3:21459952..21465911 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.