Mp6g02750



Description

Annotation

Database ID Description
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor
SMART SM00367 LRR_CC_2
Pfam PF18791 Transport inhibitor response 1 protein domain
CDD cd22159 F-box_AtTIR1-like
Pfam PF18511 F-box
Pfam PF13516 Leucine Rich repeat
SUPERFAMILY SSF81383 F-box domain
Gene3D G3DSA:1.20.1280.50 -
SUPERFAMILY SSF52058 L domain-like
FunFam G3DSA:1.20.1280.50:FF:000006 Transport inhibitor response 1
SMART SM00256 fbox_2
SUPERFAMILY SSF52047 RNI-like
PANTHER PTHR16134 F-BOX/TPR REPEAT PROTEIN POF3
KEGG K14485 transport inhibitor response 1
KOG KOG1947 Leucine rich repeat proteins, some proteins contain F-box; [R]
MapolyID Mapoly0035s0062 -
GO GO:0005515 protein binding
GO GO:0019005 SCF ubiquitin ligase complex
GO GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

Nomenclature

Gene symbol Product Transcript ID Status
MpTIR1 Auxin receptor in a TIR1/AFB family Published

Associated Literature (AI-based literature mining, Beta-version)

MpTIR1 is the central focus of this study, characterized as an evolutionarily conserved auxin receptor. Null and conditional knockout mutants were generated and shown to be viable; the protein interacted with MpIAA in auxin-dependent pull-down assays. Loss of MpTIR1 abolished organogenesis but not cell survival.

2 core 5 peripheral

Das, S., et al. (2024) · Plant Communications  research experimental subject
Sole TIR1 auxin receptor; MpTIR1-mScarlet-I showed low nuclear accumulation, was detectable at all stages with a gradual increase, and was shown active throughout gemma development in mediating IAA-triggered MpIAA degradation.
Suzuki, H., et al. (2023) · Plant Cell  research experimental subject
MpTIR1 is the central focus of this study, characterized as an evolutionarily conserved auxin receptor. Null and conditional knockout mutants were generated and shown to be viable; the protein interacted with MpIAA in auxin-dependent pull-down assays. Loss of MpTIR1 abolished organogenesis but not cell survival.
Woudenberg, S., et al. (2024) · Development  research citation background
Auxin receptor not referenced by this token in the paper; Marchantia cited only as the simple one-ARF/one-Aux/IAA comparator system.
Yamamoto, C., et al. (2024) · Proceeding of the National Academy of Sciences USA  research citation background
Auxin receptor ortholog cited as an alternative cAMP source but ruled out, since it acts in vegetative tissues not male organs.
Flores-Sandoval E, Bowman JL. (2025) · Journal of experimental botany  review citation background
Cited Mptir1 gene-edited lines as undifferentiated-cell phenotype.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g02750.1 chr6:3836944..3841364 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.