Mp7g13190



Description

Annotation

Database ID Description
SUPERFAMILY SSF47661 t-snare proteins
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd00179 SynN
Coils Coil Coil
FunFam G3DSA:1.20.58.70:FF:000003 Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group
ProSitePatterns PS00914 Syntaxin / epimorphin family signature.
Gene3D G3DSA:1.20.58.70 -
SMART SM00397 tSNARE_6
Gene3D G3DSA:1.20.5.110 -
ProSiteProfiles PS50192 t-SNARE coiled-coil homology domain profile.
PANTHER PTHR19957 SYNTAXIN
SMART SM00503 SynN_4
CDD cd15848 SNARE_syntaxin1-like
Pfam PF05739 SNARE domain
FunFam G3DSA:1.20.5.110:FF:000008 Syntaxin 132
Pfam PF00804 Syntaxin
KEGG K08486 syntaxin 1B/2/3
KOG KOG0810 SNARE protein Syntaxin 1 and related proteins; [U]
MapolyID Mapoly0009s0005 -
GO GO:0000149 SNARE binding
GO GO:0016192 vesicle-mediated transport
GO GO:0006906 vesicle fusion
GO GO:0012505 endomembrane system
GO GO:0031201 SNARE complex
GO GO:0006886 intracellular protein transport
GO GO:0005886 plasma membrane
GO GO:0048278 vesicle docking
GO GO:0016021 membrane
GO GO:0006887 exocytosis
GO GO:0016020 membrane
GO GO:0005484 SNAP receptor activity

Nomenclature

Gene symbol Product Transcript ID Status
MpSYP13A Ortholog of Arabidopsis SYP13 genes Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis SYP13 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Monomeric-Citrine-tagged MpSYP13A under the regulation of its own regulatory elements is localized to the plasma membrane and the envelopes of oil bodies. (from nomenclature)

1 core 5 peripheral

Kanazawa, T., et al. (2020) · Nature Communications  research experimental subject
PM SYP1 SNARE; dual oil body+PM localization, redirected to oil body under MpSYP12B promoter.
Carella, P., et al. (2018) · Proceedings of the National Academy of Sciences USA: doi/10.1073/pnas.1717900115  research experimental comparator
Paralogous syntaxin used as contrast to MpSYP13B; its expression was not affected during colonization and its localization was unchanged by intracellular infection structures.
Kanazawa, T., et al. (2016) · Plant and Cell Physiology  research sequence comparator
SYP13 Qa-SNARE; SNARE family inventory.
Melkonian, K., et al. (2022a) · New Phytologist  research sequence comparator
SYP13 SNARE; related family member.
Westermann, J., et al. (2020) · Frontiers in Plant Science  research experimental tool
Plasma membrane marker co-transformed with AtNPSN12 to confirm expected localization for toolkit quality control.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp7g13190.1 chr7:16849333..16854419 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.