Mp6g11010



Description

Annotation

Database ID Description
SMART SM00268 actin_3
FunFam G3DSA:3.30.420.40:FF:000291 Actin, alpha skeletal muscle
SUPERFAMILY SSF53067 Actin-like ATPase domain
ProSitePatterns PS01132 Actins and actin-related proteins signature.
FunFam G3DSA:3.30.420.40:FF:000058 Putative actin-related protein 5
ProSitePatterns PS00432 Actins signature 2.
Gene3D G3DSA:3.30.420.40 -
CDD cd00012 NBD_sugar-kinase_HSP70_actin
PRINTS PR00190 Actin signature
FunFam G3DSA:3.30.420.40:FF:000404 Major actin
FunFam G3DSA:3.90.640.10:FF:000001 Actin, muscle
Pfam PF00022 Actin
ProSitePatterns PS00406 Actins signature 1.
PANTHER PTHR11937 ACTIN
Gene3D G3DSA:3.90.640.10 Actin; Chain A, domain 4
KEGG K10355 actin, other eukaryote
KOG KOG0676 Actin and related proteins; [Z]
MapolyID Mapoly0016s0139 -

Nomenclature

Gene symbol Product Transcript ID Status
MpACTIN7 Housekeeping Provisional

Associated Literature (AI-based literature mining, Beta-version)

Housekeeping (from nomenclature)

0 core 23 peripheral

Koebke, E., et al. (2022) · Frontiers in Plant Science  research citation tool
Actin reference gene used for qPCR normalization; primers described previously.
Schmid, M. W., et al. (2018) · Genome Biology  research experimental tool
Used as a reference gene for expression normalization, reported to be evenly expressed across M. polymorpha developmental stages.
Furumoto, T., et al. (2024) · Plant & Cell Physiology  research experimental tool
Actin 7 gene used as an internal reference for RT-qPCR normalization; no functional investigation.
Ros-Moner, E., et al. (2024) · Nature Communications  research experimental tool
Used as the housekeeping reference gene for normalizing RT-qPCR expression (2^-DeltaCt method).
Liang, Y., et al. (2022) · Science Advances  research experimental tool
Constitutive actin gene (Mp6g11010) used as a reference gene for RT-qPCR normalization.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp6g11010.1 chr6:13963626..13966707 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.