Mp1g07070



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain
Pfam PF02362 B3 DNA binding domain
Pfam PF06507 Auxin response factor
Gene3D G3DSA:2.40.330.10 -
FunFam G3DSA:2.40.330.10:FF:000001 Auxin response factor
ProSiteProfiles PS51745 PB1 domain profile.
CDD cd10017 B3_DNA
PANTHER PTHR31384 AUXIN RESPONSE FACTOR 4-RELATED
ProSiteProfiles PS50863 B3 DNA-binding domain profile.
Gene3D G3DSA:3.10.20.90 -
SMART SM01019 B3_2
FunFam G3DSA:2.30.30.1040:FF:000002 Auxin response factor
Gene3D G3DSA:2.30.30.1040 -
KEGG K14486 auxin response factor
KOG KOG0644 Uncharacterized conserved protein, contains WD40 repeat and BROMO domains; N-term missing; [R]
MapolyID Mapoly0043s0098 -
GO GO:0005634 nucleus
GO GO:0005515 protein binding
GO GO:0009725 response to hormone
GO GO:0003677 DNA binding
GO GO:0006355 regulation of DNA-templated transcription

Nomenclature

Gene symbol Product Transcript ID Status
MpARF3 Transcription factor, similarity to Arabidopsis repressor ARFs. Published

Associated Literature (AI-based literature mining, Beta-version)

Transcription factor, similarity to Arabidopsis repressor ARFs.; MpARF3 has a relatively longer DBD, and its domains III and IV show lower similarity to ARFs in the clades A and B. MpARF3 mRNA contains the possible target sequence of microRNA160. These features are common with Arabidopsis ARF10 and ARF16, which possibly function as repressors. Phylogenetic analysis supported the placement of MpARF3 in the clade C including Arabidopsis ARF10, ARF16, and ARF17. (from nomenclature)

10 core 17 peripheral

Alisha A, Jarmolowski A, Szweykowska-Kulinska Z, Sierocka I. (2026) · The Plant journal : for cell and molecular biology  research experimental subject
MpARF3 (AUXIN RESPONSE FACTOR3) transcript level was unchanged in Mpspl3 knockout mutants by qPCR in this study, indicating it is not regulated by MpSPL3 despite a hypothesized role in inhibiting the reproductive transition.
Rienstra, J., et al. (2025) · Proceeding of the National Academy of Sciences USA  research experimental subject
C-class ARF assessed by complementation: its DBD failed and its B3 domain only partially complemented Mparf1-4, indicating C-class DNA-binding specificity diverged early; B3 is entirely conserved across accessions.
de Roij M, Hernandez Garcia J, Das S, Borst JW, Weijers D. (2025) · Nature plants  research experimental subject
Experimentally tested as a stable contrast: the C-class ARF MpARF3 protein is stable in its native context, used to demonstrate that the degradation behavior is specific to A- and B-class ARFs.
Melissa DÁ, Luis LJ, Eduardo FS, Annie EC, Domingo MÁ, Tom FJ, Jesús LR, Fernando OM, John BL, Mario AA, Cruz-Ramírez A. (2025) · Physiologia plantarum  research experimental subject
Auxin response factor in the MpANT co-expression cluster; moderately downregulated in MpANT loss-of-function by RT-qPCR.
Das, S., et al. (2024) · Plant Communications  research experimental subject
Class C ARF; MpARF3-mScarlet-I displayed a weak but broad accumulation in all cell types. Unlike MpARF1/MpARF2, it was unaffected by proteasome-inhibitor treatment and its pattern did not change, serving as a non-degraded contrast.

Expression Level powered by MBEX

Link to the original image in MBEX

Transcript models

Transcript ID Location Sequences Extract region
Mp1g07070.1 chr1:7599415..7604038 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.